. (F) Composition ratio of the TAM clusters in individual GBM. (G) Correlation between the number of MES-like and TAM-1 cells. (H) Heatmap of specific gene sets in TAMs. (I) Violin plot of the hypoxia gene set scores in TAMs. TAM-1 was the hypoxia-response cluster in TAMs. (J) The activated regulons in the TAM-1 cluster ranked by the regulon specificity score from high to low. (K) Survival analysis of the TAM-1 cluster signatures in TCGA and CGGA GBM databases, respectively. Gray dash line, average score; **** p < 0.0001. See also
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Journal: Frontiers in Immunology
Article Title: Single-Cell Transcriptomics Revealed Subtype-Specific Tumor Immune Microenvironments in Human Glioblastomas
doi: 10.3389/fimmu.2022.914236
Figure Lengend Snippet: Hypoxia-response TAMs in GBM. (A) UMAP visualization of TAMs. (B) UMAP visualization showing TAMs of individuals. (C) Top 20 function analysis results of TAM-1 cluster. Hypoxia-related biological processes were colored in red. (D) Violin plot of ERO1A expression level in different TAM clusters. (E) Immunofluorescence staining for TAM-1 cluster ( CD14+ERO1A+ ) in patient tumor sample. The staining was performed for seven patients, one section each, and a representative image from patient 6 with TAM-1 pointed out by white arrows was shown; scale, 10 μm. The other images are shown in Supplementary Supplementary Figure 6 . (F) Composition ratio of the TAM clusters in individual GBM. (G) Correlation between the number of MES-like and TAM-1 cells. (H) Heatmap of specific gene sets in TAMs. (I) Violin plot of the hypoxia gene set scores in TAMs. TAM-1 was the hypoxia-response cluster in TAMs. (J) The activated regulons in the TAM-1 cluster ranked by the regulon specificity score from high to low. (K) Survival analysis of the TAM-1 cluster signatures in TCGA and CGGA GBM databases, respectively. Gray dash line, average score; **** p < 0.0001. See also Supplementary Figures 5 and 6 , and Supplementary Tables 3 and 6 .
Article Snippet: The samples were incubated with the first primary antibody against CD14 (1:200 for IF, Servicebio) overnight at 4°C and then with the first corresponding secondary antibody at room temperature for 50 min under dark conditions.
Techniques: Expressing, Immunofluorescence, Staining